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ONCOSEQ PLUS TUMOR MUTATION BURDEN PANEL (TMB+)

ONCOSEQ PLUS TUMOR MUTATION BURDEN PANEL (TMB+)

(486 DNA GENİ + MSI + 26 RNA GENİ+ PD-L1(IHC))

Research on biomarker discovery continues rapidly in order to obtain more effective and clear results in cancer treatment. The most commonly used treatment method for cancer and known to have the highest effectiveness so far was chemotherapy. Chemotherapeutics are powerful drugs that cause cell death.
However, they are effective not only on the death of cancer cells, but on all cells in the body. Since the cell group on which it is most effective is rapidly dividing cells, they show significant effectiveness in cancer cells and other rapidly dividing cells in the body.

WHY CHOOSE CENTOGENE?
  • Test:
    Tumor Mutation Burden Test
  • Method:
    Next Generation Sequencing
  • Analysis Time:
    14-21 Days
  • Sample Type:
    FFPE (Tissue) and Blood (EDTA) Together or cfDNA
  • Storage Conditions:
    1 week at +4 C
  • Transport Conditions:
    The same day; At room temperature
  • Rejection Criteria:
    Hemolyzed, Lipemic, Icteric samples are not accepted

Chemotherapy side effects occur as a result of affecting the rapidly dividing normal physiology cells in the body and can reach levels that threaten the life of the person.

As cancer-targeting treatment methods will not only avoid the problems caused by side effects but also provide cancer-specific treatment, more effective and cancer-specific treatment methods such as “smart drug therapies” and “immunotherapy” have begun to be developed as a result of extensive research in this field in recent years. Thanks to cancer-specific biomarker discoveries, questions about the details of why the disease occurs, what to expect in the follow-up of the disease (prognosis), and how the treatment response will be, have begun to be answered.

“Tumor mutation burden (TMB), a new concept noticed in the results of biomarker and cancer relationship research, refers to the total number of mutations in a tumor. “Somatic mutations”, which are mutations that do not exist in our genome from birth but only occur in tumor cells, can be analyzed and calculated with new generation methods using many genomic data and algorithms.

It has been found that immunotherapy response is better in tumors with tumor mutation burden above a certain level. Although our immune system cells act for good purposes in the fight against cancer during the development and spread of cancer cells, they can also have negative effects depending on the molecules produced by the immune cells. The amount of somatic mutations reflects the burden of neoantigens, that is, when TMB is high, the expression of neoantigens is also high.

“Foundation Medicine”, an international organization, has so far conducted research on more than 1300 patients for 21 types of cancer. First, in non-small cell lung cancer (NSCCA), combined immunotherapy was observed to increase progression-free survival in patients with increased tumor burden.

PD-L1 (programmed cell death ligand): It is a molecule that allows healthy cells to escape from the immune system. It suppresses the immune system from overreacting. Tumor cells have the ability to block this checkpoint and evade immune cells (T cells). With immunotherapy, checkpoint inhibitors work, reducing PD-L1 activity, T cells are reactivated and directed towards cancer cells. PD-L1 expression can be examined by immunohistochemistry analysis. If the score is high, it means that immunotherapy may benefit. The disadvantage of this analysis performed by immunohistochemistry is that it is difficult to prepare and the interpretation of the results is subjective.

ONCOSEQ PLUS TUMOR MUTATION BURDEN PANEL (TMB+)

486 DNA GENES + MSI + 26 RNA GENES + PD-L1 (IHC)
+

ABCB9v BARD1 CD70 CTNNB1 ERCC1 FH HLA-C KAT6A MCM6 MYOCD PDK1 PSMA5 PSMD5 RB1 SMAD2 TCP11L2
ABL1 BCL2 CD79A CTSB ERCC2 FKBP9 HLA-E KDM5A MCM7 NBN PHF6 PSMA6 PSMD6 RBM10 SMAD3 TDG
ABL2 BCL2L1 CD79B CTSL ERCC3 FLCN HLA-F KDM5C MDM2 NCOR1 PIK3C2B PSMA7 PSMD7 REL SMAD4 TERC
ACE2 BCL6 CD80 CTSS ERCC4 FLT1 HLA-G KDM6A MDM4 NF1 PIK3CA PSMA8 PSMD8 RET SMARCA4 TERT
ACVR1B BCOR CD86 CUL3 ERCC5 FLT3 HMGB1 KDR MED12 NF2 PIK3CB PSMB1 PSMD9 RFC1 SMARCB1 TET2
AKT1 BCORL1 CDC27 CUL4B ERG FLT4 HMGN1 KEAP1 MEF2B NFE2L2 PIK3CG PSMB10 PSME1 RFC2 SMC1A TGFBR2
AKT2 BLM CDC73 CUX1 ERRFI1 FOXA1 HNF1A KEL MEN1 NFKBIA PIK3R1 PSMB11 PSME2 RFC3 SMC3 TNF
AKT3 BRAF CDH1 CYLD ESR1 FOXL2 HRAS KIT MET NKX2-1 PIK3R2 PSMB2 PSME3 RFC4 SMO TNFAIP3
ALK BRCA1 CDK12 DAXX ETV6 FOXP1 HSP90AA1 KMT2A MICA NOTCH1 PIM1 PSMB3 PSME4 RFC5 SOCS1 TNFRSF14
ALPK2 BRCA2 CDK4 DDR2 EWSR1 FUBP1 ICOSLG KMT2C MICB NOTCH2 PLCG2 PSMB4 PSMF1 RHEB SOS1 TNFRSF9
AMER1 BRD4 CDK6 DDX3X EXO1 GABRA6 IDE KMT2D MITF NOTCH3 PMS1 PSMB5 PSMG1 RHOA SOX10 TNFSF14
APC BRIP1 CDK8 DICER1 EZH2 GADD45A IDH1 KRAS MLH1 NOTCH4 PMS2 PSMB6 PSMG2 RICTOR SOX17 TNFSF18
AR BTK CDKN1A DIS3 FAM46C GATA1 IDH2 LGALS9 MLH3 NPEPPS POLB PSMB7 PSMG3 RIT1 SOX2 TNFSF4
ARAF C10orf54 CDKN1B DMD FANCA GATA2 IFI30 LGMN MORC4 NPM1 POLD1 PSMB8 PSMG4 RNASEH2A SOX9 TNFSF9
ARID1A CALR CDKN2A DNER FANCC GATA3 IGF1R LIG1 MPL NRAS POLD2 PSMB9 PTCH1 RNF43 SPEN TNKS
ARID1B CANX CDKN2B DNMT3A FANCD2 GATA4 IGF2 LIG3 MR1 NRDC POLD3 PSMC1 PTEN ROS1 SPOP TOP1
ARID2 CARD11 CDKN2C DOT1L FANCE GATA6 IGF2R LMO1 MRE11A NSD1 POLD4 PSMC2 PTGS2 RPA1 SRC TP53
ARID5B CASP8 CEBPA EED FANCF GLi1 IKBKE LNPEP MSH2 NTRK1 POLE PSMC3 PTPN11 RPA2 SSBP1 TP53BP1
ASXL1 CBFB CHD4 EGFR FANCG GNA11 IKZF1 LPAR2 MSH3 NTRK2 POLE4 PSMC4 PTPRD RPA3 STAG2 TPP2
ASXL2 CBL CHEK1 EP300 FAS GNA13 IL7R LRP1B MSH4 NTRK3 PPP2R1A PSMC5 QKI RPA4 STAT3 TPP2
ATM CCND1 CHEK2 EPCAM FAT1 GNAQ INPP4B LZTR1 MSH5 PALB2 PRDM1 PSMC6 RAC1 RPTOR STK11 TREX1
ATR CCND2 CIC EPHA3 FBXW7 GNAS IRF4 MAP2K1 MSH6 PARK2 PRKAR1A PSMD1 RAD17 RUNX1 SUFU TRRAP
ATRX CCND3 CNKSR1 EPHA5 FGF19 GRIN2A IRF6 MAP2K2 MTOR PARP1 PRKCG PSMD10 RAD18 RUNX1T1 SUZ12 TSC1
AURKA CCNE1 COL5A1 EPHA7 FGF3 GSK3B IRS2 MAP2K4 MUC17 PAX5 PRKCI PSMD11 RAD21 SDHA SYK TSC2
AURKB CD200 CREBBP EPHB1 FGF4 H3F3A ITGAV MAP3K1 MUTYH PBRM1 PRKCZ PSMD12 RAD50 SDHB TAP1 TSHR
AXIN1 CD274 CRKL ERAP1 FGFBP1 HERC1 ITGB3 MCL1 MYB PCNA PRKDC PSMD13 RAD51 SDHC TAP2 U2AF1
AXIN2 CD276 CRLF2 ERAP2 FGFR1 HGF JAK1 MCM2 MYC PDCD1LG2 PSMA1 PSMD14 RAD51C SDHD TAPBP VEGFA
AXL CD40 CSF1R ERBB2 FGFR2 HIST1H3B JAK2 MCM3 MYCL PDGFRA PSMA2 PSMD2 RAF1 SETD2 TAPBPL VEGFD
B2M CD40LG CTCF ERBB3 FGFR3 HLA-A JAK3 MCM4 MYCN PDGFRB PSMA3 PSMD3 RARA SF3B1 TBX3 VHL
BAP1 CD48 CTNNA1 ERBB4 FGFR4 HLA-B JUN MCM5 MYD88 PDIA3 PSMA4 PSMD4 RASA1 SIRT1 TCF7L2 VTCN1
WEE1 WT1 XPO1 XRCC5 ZFHX3 ZNF217

ALK BRAF BRD4 EGFR ERG ETVl ETV4 ETV6 EWSRl FGFRl FGFR2 FGFR3 MET
MYB NOTCH2 NRGl NTRKl NTRK2 NTRK3 NlJTMl PDGFRA PDGFRB RET ROS1 TERT TFE

ONCOSEQ TUMOR MUTATION BURDEN PANEL (TMB)

486 DNA GENES +MSI+ PD-L1 (IHC)
+

ABCB9v BARD1 CD70 CTNNB1 ERCC1 FH HLA-C KAT6A MCM6 MYOCD PDK1 PSMA5 PSMD5 RB1 SMAD2 TCP11L2
ABL1 BCL2 CD79A CTSB ERCC2 FKBP9 HLA-E KDM5A MCM7 NBN PHF6 PSMA6 PSMD6 RBM10 SMAD3 TDG
ABL2 BCL2L1 CD79B CTSL ERCC3 FLCN HLA-F KDM5C MDM2 NCOR1 PIK3C2B PSMA7 PSMD7 REL SMAD4 TERC
ACE2 BCL6 CD80 CTSS ERCC4 FLT1 HLA-G KDM6A MDM4 NF1 PIK3CA PSMA8 PSMD8 RET SMARCA4 TERT
ACVR1B BCOR CD86 CUL3 ERCC5 FLT3 HMGB1 KDR MED12 NF2 PIK3CB PSMB1 PSMD9 RFC1 SMARCB1 TET2
AKT1 BCORL1 CDC27 CUL4B ERG FLT4 HMGN1 KEAP1 MEF2B NFE2L2 PIK3CG PSMB10 PSME1 RFC2 SMC1A TGFBR2
AKT2 BLM CDC73 CUX1 ERRFI1 FOXA1 HNF1A KEL MEN1 NFKBIA PIK3R1 PSMB11 PSME2 RFC3 SMC3 TNF
AKT3 BRAF CDH1 CYLD ESR1 FOXL2 HRAS KIT MET NKX2-1 PIK3R2 PSMB2 PSME3 RFC4 SMO TNFAIP3
ALK BRCA1 CDK12 DAXX ETV6 FOXP1 HSP90AA1 KMT2A MICA NOTCH1 PIM1 PSMB3 PSME4 RFC5 SOCS1 TNFRSF14
ALPK2 BRCA2 CDK4 DDR2 EWSR1 FUBP1 ICOSLG KMT2C MICB NOTCH2 PLCG2 PSMB4 PSMF1 RHEB SOS1 TNFRSF9
AMER1 BRD4 CDK6 DDX3X EXO1 GABRA6 IDE KMT2D MITF NOTCH3 PMS1 PSMB5 PSMG1 RHOA SOX10 TNFSF14
APC BRIP1 CDK8 DICER1 EZH2 GADD45A IDH1 KRAS MLH1 NOTCH4 PMS2 PSMB6 PSMG2 RICTOR SOX17 TNFSF18
AR BTK CDKN1A DIS3 FAM46C GATA1 IDH2 LGALS9 MLH3 NPEPPS POLB PSMB7 PSMG3 RIT1 SOX2 TNFSF4
ARAF C10orf54 CDKN1B DMD FANCA GATA2 IFI30 LGMN MORC4 NPM1 POLD1 PSMB8 PSMG4 RNASEH2A SOX9 TNFSF9
ARID1A CALR CDKN2A DNER FANCC GATA3 IGF1R LIG1 MPL NRAS POLD2 PSMB9 PTCH1 RNF43 SPEN TNKS
ARID1B CANX CDKN2B DNMT3A FANCD2 GATA4 IGF2 LIG3 MR1 NRDC POLD3 PSMC1 PTEN ROS1 SPOP TOP1
ARID2 CARD11 CDKN2C DOT1L FANCE GATA6 IGF2R LMO1 MRE11A NSD1 POLD4 PSMC2 PTGS2 RPA1 SRC TP53
ARID5B CASP8 CEBPA EED FANCF GLi1 IKBKE LNPEP MSH2 NTRK1 POLE PSMC3 PTPN11 RPA2 SSBP1 TP53BP1
ASXL1 CBFB CHD4 EGFR FANCG GNA11 IKZF1 LPAR2 MSH3 NTRK2 POLE4 PSMC4 PTPRD RPA3 STAG2 TPP2
ASXL2 CBL CHEK1 EP300 FAS GNA13 IL7R LRP1B MSH4 NTRK3 PPP2R1A PSMC5 QKI RPA4 STAT3 TPP2
ATM CCND1 CHEK2 EPCAM FAT1 GNAQ INPP4B LZTR1 MSH5 PALB2 PRDM1 PSMC6 RAC1 RPTOR STK11 TREX1
ATR CCND2 CIC EPHA3 FBXW7 GNAS IRF4 MAP2K1 MSH6 PARK2 PRKAR1A PSMD1 RAD17 RUNX1 SUFU TRRAP
ATRX CCND3 CNKSR1 EPHA5 FGF19 GRIN2A IRF6 MAP2K2 MTOR PARP1 PRKCG PSMD10 RAD18 RUNX1T1 SUZ12 TSC1
AURKA CCNE1 COL5A1 EPHA7 FGF3 GSK3B IRS2 MAP2K4 MUC17 PAX5 PRKCI PSMD11 RAD21 SDHA SYK TSC2
AURKB CD200 CREBBP EPHB1 FGF4 H3F3A ITGAV MAP3K1 MUTYH PBRM1 PRKCZ PSMD12 RAD50 SDHB TAP1 TSHR
AXIN1 CD274 CRKL ERAP1 FGFBP1 HERC1 ITGB3 MCL1 MYB PCNA PRKDC PSMD13 RAD51 SDHC TAP2 U2AF1
AXIN2 CD276 CRLF2 ERAP2 FGFR1 HGF JAK1 MCM2 MYC PDCD1LG2 PSMA1 PSMD14 RAD51C SDHD TAPBP VEGFA
AXL CD40 CSF1R ERBB2 FGFR2 HIST1H3B JAK2 MCM3 MYCL PDGFRA PSMA2 PSMD2 RAF1 SETD2 TAPBPL VEGFD
B2M CD40LG CTCF ERBB3 FGFR3 HLA-A JAK3 MCM4 MYCN PDGFRB PSMA3 PSMD3 RARA SF3B1 TBX3 VHL
BAP1 CD48 CTNNA1 ERBB4 FGFR4 HLA-B JUN MCM5 MYD88 PDIA3 PSMA4 PSMD4 RASA1 SIRT1 TCF7L2 VTCN1
WEE1 WT1 XPO1 XRCC5 ZFHX3 ZNF217

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